| Time | Topic |
|---|---|
| 1:00 | Introductions and Startup |
| 1:30 | Sequence QC: |
| Warming Up | |
| Sequence QC | |
| Trimming | |
| 3:00 | Break |
| 3:15 | Alignment: |
| Reference Genomes | |
| Alignment | |
| Quantification: | |
| Alignment QC and Quantification | |
| Additional Details | |
| 5:00 | Day 1 concludes |
| 1:00 | Review and questions |
| 1:20 | Quantification (continued) |
| Part 2 | |
| Groups and Modeling: | |
| DE Introduction | |
| DE Initialization | |
| DE Normalization and Modeling | |
| 3:00 | Break |
| 3:15 | Expression plots: |
| Sample QC | |
| 5:00 | Day 2 concludes |
| 1:00 | Review |
| 1:10 | Differential Expression: |
| DE Testing | |
| DE Visualization | |
| 3:00 | Break |
| 3:15 | DE Annotation |
| Bonus Content | |
| 4:45 | Wrap-up |
| 5:00 | Day 3 concludes |